rs219498318 SNP Detail

Summary

• ID
  rs219498318
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:45947092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGGCAGG GGATGTGTGA
  TTGCGGACAG TGAGAGGGCC GTTGCTATCA TGCCCGGGCG CGCGGGCGTC GCCCGGTTCT
  GCTTGCTGGC TCTCGCTCTG CAGCTACATT GGCCGCTGGC GGCGTGCGAG CCGGGATGGA
  CCACAAGTAA GTGGCAGCGC GCAGATGGGT TCTGAGGCGA CTAGGGGTGG TGGTGATGAC
  K
  GAGGGTCTGA GAGTCGCTCT TGCATGCCGG CAGCTCCATG ACCGCTATCC CTGCGGACTC
  CGCCACTCCC CGGGTGTGAG TATCGCCACC CCCAAGCCTA GGAGCCCAGG CTTTGTTCTC
  TTGTGGTGAG CCACGGGAGG TCGTGGAGCT AGTGCGCTCA CTGCAATCAG AAAGCAGTAA
  GTCTCTCTCT CTCTCTCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383234380	MGP_WTSI_11_45869767	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219498318					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383234380	MGP_WTSI_11_45869767	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45947092 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adam19	ADAM metallopeptidase domain 19			Intron
				Noncoding-Transcript-Variant
Cpgi2772	CpG island 2772			within coordinates
Cpgi2773	CpG island 2773			797 bp proximal
Gm72342	predicted gene, 72342			within coordinates
Rr402508	regulatory region 402508			259 bp downstream
Rr445869	regulatory region 445869			263 bp distal
Rr445870	regulatory region 445870			within coordinates
Rr445871	regulatory region 445871			1744 bp proximal
Rr445872	regulatory region 445872			1908 bp proximal
Tssr3474	transcription start site region 3474			298 bp downstream
Tssr101088	transcription start site region 101088			197 bp downstream
Tssr101089	transcription start site region 101089			168 bp downstream
Tssr101090	transcription start site region 101090			90 bp downstream
Tssr101091	transcription start site region 101091			35 bp downstream
Tssr107582	transcription start site region 107582			1844 bp downstream
Tssr107583	transcription start site region 107583			1909 bp downstream