rs219499619 SNP Detail

Summary

• ID
  rs219499619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:52589561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGATGA GAGTGACCAG
  GACAATCAGC ACCAGCGTAG ATGAAAAAGA CTGGAAGAGC TGCTGTCCCA CCTGCGTGAT
  GCAAGTGCCA CCACCTGCGC CTGAGCTGCG GAGACCTGCG CTGCTGCCTC CACTGGCGTT
  GTGGGAAGCA AAGGTCCGGT TCAGGAGACA AGGCGGCAGG GCCAGCCTCA GCTCTTTCGG
  Y
  GCCCTGGCAC TCATCGGCGC TGGGCTGAGA GGGGCCAGGC CCACCAGGCT TCCTCTGTTG
  GACACACGGT TCCCACCAGC CAAGACGTGG ACAGGAACCC ACACCACCCC AACTGCTCTT
  TAGCGCTGGA GGGAGTGAGC TCTCCAGCCA AAGACTGAGG GAGCAACTGC CGCCAAGCAA
  GCGGGCCAGA GCTAGTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377592011	MGP_WTSI_9_52486366	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219499619					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377592011	MGP_WTSI_9_52486366	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:52589561 () rs orientation: forward

Symbol	Name	Function Class
AI593442	expressed sequence AI593442	within coordinates
Cpgi21748	CpG island 21748	within coordinates
Cpgi21749	CpG island 21749	903 bp proximal
Gm1715	predicted gene 1715	1602 bp upstream
Rr678956	regulatory region 678956	1411 bp distal
Rr678957	regulatory region 678957	1158 bp proximal
Rr678958	regulatory region 678958	1613 bp proximal
Tssr85116	transcription start site region 85116	1587 bp upstream
Tssr89588	transcription start site region 89588	1453 bp upstream
Tssr89589	transcription start site region 89589	387 bp upstream
Tssr89590	transcription start site region 89590	1135 bp downstream
Tssr89591	transcription start site region 89591	1416 bp downstream
Tssr89592	transcription start site region 89592	1436 bp downstream
Tssr89593	transcription start site region 89593	1469 bp downstream