rs219500053 SNP Detail

Summary

• ID
  rs219500053
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97444933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATATAT ATATATATAT
  ATATATATAT ATATATATAT ATATAAACAC ATACATATAT ATACATATAT GCATATATGT
  ATATATGTGT TCTTTATATA AAAAAGCAAA TATATACATA TATGTGCGTG TGCGTGTATG
  CAATAAGTAA ATTGGACCTG TGAGATGGTT CAGTAGGTAA AGGCATACTG ACAAACCTGA
  W
  GATCTGAGAT TGATCCTTGG TACCTACATG GTAAAATTAG TGAAAGGACT CAGCATTGTT
  CAATGATTTC CACACATATG CTGTGATATG CATGTACTTA CATACAGCAC ACAGCACACA
  CACATACAAA CACAATAAAT AAATGTAAAG AAAAAGGGTA GAACTAATCT ATTGAAACAG
  TATGTTAGCT ATTACCCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324130777	CHEV_12_98716884	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219500053					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97444933 () rs orientation: forward

Symbol	Name	Function Class
Rr387670	regulatory region 387670	908 bp upstream
Rr470847	regulatory region 470847	1482 bp distal