rs219513716 SNP Detail

Summary

• ID
  rs219513716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72195051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACACTG ACCAAGGCGG
  CACTTACGTA ATCGTAACAT CTTAAGTTCG TTAACATGTT TAACGTGTAG AGTCTGGTTT
  CTGAAACACA ACTAATCGTG CACTCATTCC TTTTAAAACA GAATATGCTT CCCTGGGCTC
  CCTGTATGAT TACATTAACA GCAACAGGAG TGAAGAGATG GACATGGAAC ACATCATGAC
  Y
  TGGGCCACTG ACGTAGCCAA AGGTAACGCT GCTTGCTGTG AGCCCTCAGA GGTGGGCAGT
  GTCTTCCCAC TCTGACCTGA GAGACTCTCT CGGAAGTCTT CTATTCTGTG TCTGCAGACA
  TTCTTTTTGC AGATCAAATT TAGTAAAAAT ATTTCAACTC ACTGTACAAA TATTTTAGGT
  TATTGCCTTC CCATTACTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342073	CHEV_2_72202764	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219513716					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72195051 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			1142 bp proximal
Rr558962	regulatory region 558962			1823 bp proximal
Tssr18337	transcription start site region 18337			305 bp upstream