rs219519160 SNP Detail

Summary

• ID
  rs219519160
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129917070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAA TTAAGCGCTA TTTCCATAAT
  T
  AAAGAAGACC ATCCTGACTT AATAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321692420	CHEV_5_130364099	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219519160					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129917070 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	759 bp upstream
Cpgi16684	CpG island 16684	608 bp distal
Rr399383	regulatory region 399383	720 bp downstream
Rr621372	regulatory region 621372	770 bp distal
Rr621373	regulatory region 621373	269 bp distal
Tssr53498	transcription start site region 53498	1072 bp upstream
Tssr53499	transcription start site region 53499	924 bp upstream
Tssr53500	transcription start site region 53500	800 bp upstream
Tssr53501	transcription start site region 53501	749 bp upstream