rs219522558 SNP Detail

Summary

• ID
  rs219522558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:66953960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gcatgcatC AGGACATTCG TAAAAACAAA
  CAGTGAAACT CTCTACTTGT TTGCCGCGTT TGCATGCTTT AATAAGGCCA CATATTCCCT
  GCTCACTCCT CCAGCCTTGT GGGTTGGAGG CCCCTCCTAT GTGTTGTGTG TTGTGTCTAC
  Y
  CATTTAATAC CTTCATGTCG GTGCTAAGTC CCAGATTGGA ATTTGTATCA CACTTACTGT
  GTGTGCGTGC ACCCCATGCC TGTATGGAGG TCAGAGGGCA CCTAAGTGGT TGTCAGGCTT
  GTGCCTTAGT GATCTTTACA TGAGGAACAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323345140	CHEV_10_66580929	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219522558					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:66953960 () rs orientation: forward

Symbol	Name	Function Class
Gm65987	predicted gene, 65987	1280 bp upstream
Gm67716	predicted gene, 67716	408 bp downstream
Jmjd1c	jumonji domain containing 1C	within coordinates
Rr215833	regulatory region 215833	160 bp distal
Tssr93804	transcription start site region 93804	1318 bp upstream