rs219529564 SNP Detail

Summary

• ID
  rs219529564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96511084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCCCTCC TCCCCCACCC
  ATGCCTTTCT ACTTGGGCTC TGGTGATCCT GCTTGCTAAG CAGGCACTTT ACCAACTGAG
  CCATCTCCCC ACCCGCTGGT TTTCTGATCT GTCAACTTGA TACTATTTAT ACCTTGTGAA
  ATCTATGGGA CACAAATAAG TTAGAAATGA AACACTGAAG AAAGTGTGGA CCATTATCTA
  R
  CCTCTAGAAC TTCCACAATA TAAACATCGG GCCACCCTCG CTCTTCTTAA GGATGATTCG
  GACTACACTA CCCAGGAGTG CTTCCTCTCA GGTGGATCAG ATGAGAGGCT CCCAAAGAGC
  AGTTCTGAGC TTAACAGCTC ATCTCCAGGC TAACAGGGAG CTACCAGGTT CTCCCCAAGG
  TTTCTCAGTG TGGTAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323111043	CHEV_9_96529450	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219529564					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96511084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22167	CpG island 22167	1412 bp proximal
Rasa2	RAS p21 protein activator 2	within coordinates
Tssr86611	transcription start site region 86611	1962 bp upstream
Tssr90973	transcription start site region 90973	1594 bp downstream
Tssr90974	transcription start site region 90974	1840 bp downstream