rs219531729 SNP Detail

Summary

• ID
  rs219531729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95738202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGAGAAAA AGAGAAACTG TTGGTGATTC
  TGGGGAGAAT TAGGGCAGGG AGGGGGAGGG ACACAAGGGC AGAGTATAAT AAATACTGGG
  TTAGGACTGA ATGGGAGATG AAAATAGAAT CAGCCTTACG AAAAATTCTT CTGCAGAGTT
  Y
  GGCAGAGAGA GAGAGTCCTC AGAGGGAGGA CCGACACTGG CCTTGGCATC TGCCTCTCAT
  TTATTGGTGT ATCACTAAGG CTGTCCAGAT AAATGGCTGC CAGCTTCCTT TCATTCTGAT
  TTGCACCCCC CTCCAAACTC AAGGGTAGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323104508	CHEV_9_95756568	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219531729					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95738202 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	within coordinates
Atr	ataxia telangiectasia and Rad3 related	1448 bp upstream
Cpgi22158	CpG island 22158	1231 bp proximal
Rr206894	regulatory region 206894	798 bp proximal
Rr368834	regulatory region 368834	1261 bp upstream
Tssr86577	transcription start site region 86577	1479 bp upstream
Tssr86578	transcription start site region 86578	1545 bp upstream
Tssr86579	transcription start site region 86579	1795 bp upstream
Tssr90940	transcription start site region 90940	1410 bp downstream
Tssr90941	transcription start site region 90941	1715 bp downstream
Tssr90942	transcription start site region 90942	1732 bp downstream