rs219533465 SNP Detail

Summary

• ID
  rs219533465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8555750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCAAAGG CTGAGGGCAG
  CTGCGCGCCT TGCAGGTGTC TCCGCAATTA AGCGCGACGC CCGGCAGAGC GCTCGGAAGT
  TATTGGGGGG AGGCTCTCCG GGGGCGCGTT CAGAAGCAGG TGCAGGGGAA CCTGCGCACC
  CGCTCCCATA CCCACCCCAA GAGCTCAGGG GCCGGGGAGC AGGCCCAACC AGCCTGGCCA
  R
  AGCCACACAC CCCGGAAAGA GGACGGTCCC CGGGGCCCGC CTCCCAACCT GGGTACCCGG
  AGCCAACACA CCTCGATCCT AATTTACGAC TCCGGCGCTT TGTGCCCAGC AGCCCGTGCG
  CTGCACAATG CGTGAACTCG GGGGTCCGGG GCCACCCCCC GCCGGGCCGC ATGACTGTGC
  AGCCCCGGCC CGGCAAAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395341334	MGP_WTSI_16_8737979	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219533465					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395341334	MGP_WTSI_16_8737979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8555750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7942	CpG island 7942	within coordinates
Gm59849	predicted gene, 59849	within coordinates
Rr511319	regulatory region 511319	1321 bp distal
Rr511320	regulatory region 511320	388 bp distal
Rr511321	regulatory region 511321	within coordinates
Rr511322	regulatory region 511322	265 bp distal
Rr511323	regulatory region 511323	446 bp proximal
Tssr139876	transcription start site region 139876	145 bp upstream
Tssr139877	transcription start site region 139877	998 bp downstream
Tssr139878	transcription start site region 139878	1013 bp downstream
Tssr139879	transcription start site region 139879	1075 bp downstream
Usp7	ubiquitin specific peptidase 7	within coordinates