rs219540697 SNP Detail

Summary

• ID
  rs219540697
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62749186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGACCTG TTGTATTCCA
  GACTATTTGG CCAATGTTCT TGCCAGATCC CAGACTGTAC CCACACTCCC ACATTTCTTC
  ACCCTTACTT TTTATAAGTT TTACAGATTT TGTATTTAAG CTTTGCTGTT TTCCCTCCTC
  TGCTAACGTA GGAAGCTCCA ATATTCTTCT AATTGATAAT GTTTCCAGTG CCCACCCCCC
  M
  CACACACACC CTGATTTCTA TAATTGACGT CCTTGACTAG ACTGCAAAGT AGGCAATCCA
  GAAAATGGAC TATCTGAAAC AATCAACCTC ATACTTCACT GTACCCTGGA CCTGTGGTGG
  ACCCAGGGCC TGACACAGCC CCTTGATGGG TCCATCCACC TTTTGAGATC TTGGCTTTTT
  GTTTTTGTTT TTGTTTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325650771	CHEV_18_62775769	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219540697					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62749186 () rs orientation: forward

Symbol	Name	Function Class
Spink10	serine peptidase inhibitor, Kazal type 10	within coordinates
Spink13	serine peptidase inhibitor, Kazal type 13	within coordinates
Tssr153633	transcription start site region 153633	422 bp upstream
Tssr153634	transcription start site region 153634	392 bp upstream
Tssr153635	transcription start site region 153635	368 bp upstream