rs219541286 SNP Detail

Summary

• ID
  rs219541286
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122826296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATGGAAC ATAGATGGCT
  CTATGAACAA GCAGAATACA CAGGGAAGAG AGAGCTCCAA GCTACAACTT CTAAAACACT
  CCAGGAGTAG GAAAGTGTTT ATGTGTATCT GTGCTCACTT GCTCACATGA ACACTGGAAT
  TATCTCAGGT TGCTTTTAGT GGGTGGCATT TGGCACTGTG TTCTGTCAAA CTCTAACTCA
  D
  CACTCCCTGC TTTCATAGAT CTTTTCTTAC TGTGTCTCTT TCCCCACTTA AAAATCACTT
  GTCACCACCA CAAAACTGTA CAATAAATGA ATATCTTCCA TTCAGAACAA TAAGAGCAGC
  CTTCCATGCA AACTAGAAGT TTAGATGATG CTAAGGAAAA AAAAAGAATA CTGAAAACAG
  ATGAAAAAGT TATTCATTGC                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914771	MGP_WTSI_6_122799355	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219541286					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914771	MGP_WTSI_6_122799355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122826296 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	1361 bp downstream
Tssr58710	transcription start site region 58710	1141 bp downstream
Tssr58711	transcription start site region 58711	1120 bp upstream
Tssr58712	transcription start site region 58712	1238 bp upstream
Tssr58713	transcription start site region 58713	1294 bp upstream
Tssr62966	transcription start site region 62966	1551 bp upstream
Tssr62967	transcription start site region 62967	1506 bp upstream
Tssr62968	transcription start site region 62968	1458 bp upstream
Tssr62969	transcription start site region 62969	1138 bp upstream
Tssr62970	transcription start site region 62970	1118 bp upstream
Tssr62971	transcription start site region 62971	1058 bp upstream
Tssr62972	transcription start site region 62972	958 bp upstream
Tssr62973	transcription start site region 62973	897 bp upstream
Tssr62974	transcription start site region 62974	811 bp upstream
Tssr62975	transcription start site region 62975	726 bp upstream
Tssr62976	transcription start site region 62976	637 bp upstream
Tssr62977	transcription start site region 62977	579 bp upstream
Tssr62978	transcription start site region 62978	525 bp upstream
Tssr62979	transcription start site region 62979	492 bp upstream
Tssr62980	transcription start site region 62980	476 bp upstream
Tssr62981	transcription start site region 62981	457 bp upstream
Tssr62982	transcription start site region 62982	298 bp upstream
Tssr62983	transcription start site region 62983	149 bp downstream
Tssr62984	transcription start site region 62984	219 bp downstream
Tssr62985	transcription start site region 62985	262 bp downstream
Tssr62986	transcription start site region 62986	573 bp downstream
Tssr62987	transcription start site region 62987	703 bp downstream
Tssr62988	transcription start site region 62988	771 bp downstream
Tssr62989	transcription start site region 62989	930 bp downstream
Tssr62990	transcription start site region 62990	976 bp downstream
Tssr62991	transcription start site region 62991	1003 bp downstream
Tssr62992	transcription start site region 62992	1028 bp downstream
Tssr62993	transcription start site region 62993	1122 bp downstream
Tssr62994	transcription start site region 62994	1228 bp downstream
Tssr62995	transcription start site region 62995	1345 bp downstream
Tssr62996	transcription start site region 62996	1405 bp downstream
Tssr62997	transcription start site region 62997	1547 bp downstream
Tssr62998	transcription start site region 62998	1602 bp downstream
Tssr62999	transcription start site region 62999	1673 bp downstream
Tssr63000	transcription start site region 63000	1730 bp downstream
Tssr63001	transcription start site region 63001	1753 bp downstream