rs219544060 SNP Detail

Summary

• ID
  rs219544060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85943338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTGGCCC CGATCATCCC
  GCAGGGTAAG CGGCGCGCAC GCGGACTCCC ACACGGACCT GGGCGACGCT GGCCACGCTC
  TGTCCTAGCT GCCGGGCCGC GACCCCGTGT GCCCACACTC TCACTCGGTG GCCCACAGCA
  GCGACCCTCC CTTCGGGGAG CAGCGCGGGC GCGCCCCCGC ACACACGCTC CCGGGGCGCG
  Y
  GTCACGGCCG CCCCTCGCGC GTACCACGGG CGCTGTGCGG GTCAGGGTCC TGGTGGGCGA
  GAGGCAGACG TCGATGGGAC GCAGGGCCCA AACTATGATG TGGGGGAGTC ATTAGATGGG
  TCACCATGCC TAGGCCGCTA GCGGGGGGGT CAGGATGAGG GCACAGCAAA TGTCGTCCTA
  CTGACCCACT CTCTTGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss394822182	MGP_WTSI_15_85889567	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs219544060					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394822182	MGP_WTSI_15_85889567	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85943338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7499	CpG island 7499	within coordinates
Gm41375	predicted gene, 41375	521 bp upstream
Gramd4	GRAM domain containing 4	within coordinates
Rr507411	regulatory region 507411	1432 bp distal
Rr507412	regulatory region 507412	400 bp distal
Rr507413	regulatory region 507413	863 bp distal
Rr507414	regulatory region 507414	within coordinates
Tssr132563	transcription start site region 132563	344 bp downstream
Tssr132564	transcription start site region 132564	286 bp downstream
Tssr135780	transcription start site region 135780	546 bp upstream