rs219546320 SNP Detail

Summary

• ID
  rs219546320
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAA TATAATATAT TATTATTATA
  A
  TTATCTATTA TATCCCTATT AATTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321351222	CHEV_4_134774100	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219546320					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945496 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	296 bp distal
Rr86244	regulatory region 86244	1305 bp proximal
Rr102925	regulatory region 102925	1906 bp proximal
Tssr43955	transcription start site region 43955	1789 bp upstream
Tssr43956	transcription start site region 43956	1758 bp upstream
Tssr43957	transcription start site region 43957	1508 bp upstream
Tssr43958	transcription start site region 43958	1372 bp upstream
Tssr43959	transcription start site region 43959	1351 bp upstream
Tssr43960	transcription start site region 43960	1199 bp upstream
Tssr43961	transcription start site region 43961	1140 bp upstream
Tssr43962	transcription start site region 43962	1094 bp upstream
Tssr43963	transcription start site region 43963	1035 bp upstream
Tssr43964	transcription start site region 43964	923 bp upstream
Tssr43965	transcription start site region 43965	427 bp downstream