rs219547940 SNP Detail

Summary

• ID
  rs219547940
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158099606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCGAAA ATTAAAATAT
  GTTTGGTGTT GTGTCTTGGA GACGAGTCCA TGTAACTGAT TCTCGTATTT ATTTCTGAAG
  TTCCGGTTAA GGCTCCCATC TGGATTCTCT TTCTCGCAAG GCACACTATG CCTGCTTTCC
  CTACTGGAAG GCCATCCTGT CCTCACAGTA AGCTAGGGGC GAAGGTGATA GTCCCCCCCC
  M
  CCCCCCACCA CCACTCTATA GGAGAGGAAA CCGAGGCACA GAGAAGCACA GAGAGGCTGA
  GACCAGCCTT AAAGAGTAGC TGAGATGCCA AGGACAAGAC TCCAGAATTA GAGCACTAAA
  AAAGTACCCC TGCAGCCTGG GATGGGGGAC ACCTCCAAAG GTCCCGTTTT TTAAACAATT
  TACTACGGAT ACAACCAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss356277754	MGP_WTSI_2_158083422	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs219547940					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356277754	MGP_WTSI_2_158083422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158099606 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	408 bp upstream
Cpgi12591	CpG island 12591	200 bp proximal
Gm34571	predicted gene, 34571	within coordinates
Rr568712	regulatory region 568712	396 bp distal
Rr568713	regulatory region 568713	348 bp proximal
Rr568714	regulatory region 568714	1046 bp proximal
Rr568715	regulatory region 568715	1311 bp proximal
Tssr727	transcription start site region 727	532 bp upstream
Tssr21302	transcription start site region 21302	379 bp upstream
Tssr21303	transcription start site region 21303	517 bp upstream
Tssr21304	transcription start site region 21304	539 bp upstream
Tssr21305	transcription start site region 21305	551 bp upstream
Tssr21306	transcription start site region 21306	574 bp upstream
Tssr27222	transcription start site region 27222	1259 bp downstream