rs219548694 SNP Detail

Summary

• ID
  rs219548694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45290799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGTTCTG AACACTCAGA
  GAGGAGCAGA AATGTGCACT GGAAACTCTT TGCCCCCAAA CTGAGGGTCA AGTCTTGAAC
  ATGTGAGTGA CATTCCTGTG GGTGCATGCC AGCAAGAGTA AGTTGGGGTG GGAAGTCATG
  TAAAGTTGTA GTGCAAACTA GAGTCCAGAG AGATTTGAGC TCCAGGGTTT AGTTTGCAGG
  R
  TGCTGGCTGT GGGGAATTCG AGGGGCAAAG GGGTGCGTGG ATAAAAGGAA GTGAGAGGTT
  GATGAGTCAG GTTGGCAAGA TGGCGACTGT GCCAGGGTGG TCACAGACTC CTGAAGTGGC
  AGGTGGAGCC AGGAGCATGG TTGCCTCTCG GCTGAGGCTG GCTAGCTTAC AGTCTCAGGA
  GTGGCTCTGG CCCAAGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371181524	MGP_WTSI_7_52896745	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219548694					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371181524	MGP_WTSI_7_52896745	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45290799 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19075	CpG island 19075	1522 bp distal
Cpgi19076	CpG island 19076	1663 bp proximal
Mamstr	MEF2 activating motif and SAP domain containing transcriptional regulator	within coordinates
Rr646529	regulatory region 646529	1372 bp distal
Rr646530	regulatory region 646530	866 bp distal
Tssr2250	transcription start site region 2250	1468 bp downstream
Tssr66600	transcription start site region 66600	1478 bp downstream
Tssr66601	transcription start site region 66601	1363 bp downstream
Tssr66602	transcription start site region 66602	936 bp downstream
Tssr66603	transcription start site region 66603	364 bp upstream