rs219553958 SNP Detail

Summary

• ID
  rs219553958
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71642038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCGCCC GCCACTCGCT
  GTACTCCGCG CCCGCGGCTC AGCTGGGCGC CCGCCCGCTC CGCCACTGCT CAGCGCGGAA
  GTCCGCAGCC TCGGGGAGCT GCGCGACGCG GGCCTGGGAG CGCGGGTGCG CTTGCTACAG
  GCGTCTGAGC TTTGGGCACT GCGGGCTGCG GGCTTGGCGC CCCGGAAGGC GGGTGCCCCA
  R
  TCGGCTGTGA TCGCTGGGTG AGTCCTGTCT TCGAGGTCTC CCAGCCAGGA CCCTAGCACG
  GGCTGCGAGC CGGATCTACC CCCGCCCCGG GCAAACAAGT TTGTGTAGAT GCGACTGGGA
  GCGCGCGGGG TTGCACCTGC TGGGGGCGCG GGGTTGCACC TGCTGGGGCG CAGGGCGCGC
  TGGCGAGGCG CCTTCCCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383831625	MGP_WTSI_11_71564714	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219553958					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383831625	MGP_WTSI_11_71564714	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71642038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	within coordinates
Rr236016	regulatory region 236016	1038 bp distal
Rr236017	regulatory region 236017	1363 bp proximal
Rr247127	regulatory region 247127	within coordinates
Tssr102813	transcription start site region 102813	1275 bp downstream
Tssr102814	transcription start site region 102814	521 bp downstream
Tssr102815	transcription start site region 102815	217 bp downstream
Tssr102816	transcription start site region 102816	173 bp downstream
Tssr102817	transcription start site region 102817	153 bp downstream
Wscd1	WSC domain containing 1	within coordinates