rs219559446 SNP Detail

Summary

• ID
  rs219559446
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76546572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCCCTTG GCCTTCTCTT
  AAAAGGGGGA AACTGAGTCT CAGAGGGGAA GAGGTAGTTT GCTGTTCCAT GCCACTAATC
  AACTGCCCGT CATGAATCTG GCACAAAGTA CATCCCTTGA CCAAGTTGTC CACAGCATGG
  AGTCAGACCA GTCATAAGGC TGACAAACAG TGTGTCCATG GTGTTGGGGG CAAGGGCTTT
  K
  TCCCATGCGT GTAGCATGAG AACAGCTGTC CTCATGTTGC TCTGCTAGGC CAGGGGTCAC
  CCTGGACAGT GCCATACAGC CAGGACACAA TCTTTCTCGA GGTAAAAAGT GCCAGGCACA
  TTGTGAGGAC TGTTTCTAGC CCTACAGTCC CTGAAAGCAG AGGAGGCATG TCTAAGACAG
  ATGTAGGCAC TGCCCATTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss380951660	MGP_WTSI_10_76173483	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	G	T	T	T	G	T	T	T	T	T	T	G	G	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs219559446					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	G	T	T	T	G	T	T	T	T	T	T	G	G	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380951660	MGP_WTSI_10_76173483	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76546572 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Tssr98195	transcription start site region 98195	1619 bp upstream
Tssr98196	transcription start site region 98196	1382 bp upstream
Tssr98197	transcription start site region 98197	1227 bp upstream
Tssr98198	transcription start site region 98198	1157 bp upstream
Tssr98199	transcription start site region 98199	1072 bp upstream
Tssr98200	transcription start site region 98200	1005 bp upstream
Tssr98201	transcription start site region 98201	914 bp downstream