rs219560370 SNP Detail

Summary

• ID
  rs219560370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78697840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACAATGC CCAGACTCAA
  CACTGGCTGC CTGCTACTCA AGCAGTGTCT GTTACTTAAT GTAAAGTTAC TTAAGAGTGT
  TACTTAATGT AAAGTTGGGA GATGTCTGAT TCAGACCCTG CCCATCTGCT CCCTTTCATT
  CTGTCAAATC GAAGTGTTGG GGGATTGATC CACAAACAGA CCATTATCCC TCTTCACACA
  Y
  GACTCTGTTC AAACTGGAAC ACCCTTCTCC CCATCCAGGT GAATGTCAAT AATGGGGTCT
  CTTTCCAGTC ACTTGGCAGA GCTCTTGTCG GGGAGGGAGT AAGGAGACGG CTCTGGACAC
  ACGAAGCAGT TTATGTGCTT AGCATATACC AGGATATAGC TCGCTTGTGT AAGTTCACTG
  AATCTGTATC TTTGAAACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354575668	MGP_WTSI_2_78707653	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219560370					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354575668	MGP_WTSI_2_78707653	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78697840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11839	CpG island 11839	845 bp proximal
Rr559887	regulatory region 559887	1061 bp proximal
Rr559888	regulatory region 559888	1415 bp proximal
Rr559889	regulatory region 559889	1692 bp proximal
Rr559890	regulatory region 559890	1698 bp proximal
Tssr18521	transcription start site region 18521	1229 bp upstream
Tssr18522	transcription start site region 18522	1299 bp upstream
Tssr18523	transcription start site region 18523	1513 bp upstream
Tssr18524	transcription start site region 18524	1624 bp upstream
Tssr18525	transcription start site region 18525	1656 bp upstream
Tssr18526	transcription start site region 18526	1705 bp upstream
Tssr18527	transcription start site region 18527	1802 bp upstream
Tssr18528	transcription start site region 18528	1849 bp upstream
Tssr18529	transcription start site region 18529	1986 bp upstream
Ube2e3	ubiquitin-conjugating enzyme E2E 3	628 bp upstream