rs219564140 SNP Detail

Summary

• ID
  rs219564140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153060696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCAAAGGA TTCTTAATTG CTGATCCACT
  GGAAGTTACT TTTAATTCTA ATATTCAGAG ACTGTTTTCA CTCTCAGAAT GTTTTCTACT
  AGGTTTCAAC CAGTTTATCC TGACTCAGGG GGAGCCCTCT CGACATGACC ACTTTCATAC
  R
  TTTTTTTGTT TTAAAGTTCA TCTTACATAT CTGAGCTACA CAACAGGTTT TGACAGGACT
  AGTGAAATGG TTACTATTGT CAAGAAAATG AACATGGCTA TCATGCCAGT TACTCCTTTT
  TGGTGACAAT TATACATGAT CGAGCATCAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320071222	CHEV_1_155032080	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219564140					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153060696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	820 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Rr28719	regulatory region 28719	within coordinates
Tssr14250	transcription start site region 14250	1061 bp downstream
Tssr14251	transcription start site region 14251	1121 bp downstream
Tssr14252	transcription start site region 14252	1152 bp downstream
Tssr14253	transcription start site region 14253	1175 bp downstream
Tssr14254	transcription start site region 14254	1192 bp downstream