rs219574380 SNP Detail

Summary

• ID
  rs219574380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108639616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGTCAGA AGGGACTCCA
  CTGACCTCAC GGGTGACAGA CTCTCCGTTT TTTTCTTCTT CTTCAGACTT TGGGTCACTT
  GGAAAAAGCA GTGGTTCTGG AGCTTACGTT GAAGCACGTG AAAGCATTGA CAAATCTAAT
  TGATCAGCAG CAGCAGAAAA TCATTGCCCT GCAGAGCGGT TTACAAGCTG GTGAGTCCCC
  R
  GCCTGATTAG TGTCTCCTGA GAGCTCAGTG CCAATCTAGC CCCTGGGAGC TCGCTCTGGC
  TTCTGACTCT TCTGTTACCA TTCATTTTTC ACAGTCACTG GGCAGGGGTG GGGGGGGGGG
  AGATGCTCTT CTGATTCTTT CCTAAAAGGT CATATTTTGC CATACGGAAT GCTGCTGTGC
  GCCACCTGAA ATGAGTCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369592133	MGP_WTSI_6_108612649	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219574380					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369592133	MGP_WTSI_6_108612649	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108639616 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	1721 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	922 bp distal
Rr399817	regulatory region 399817	773 bp downstream
Rr636156	regulatory region 636156	1771 bp distal
Rr636157	regulatory region 636157	1910 bp distal
Rr636158	regulatory region 636158	1231 bp distal
Rr636159	regulatory region 636159	668 bp distal
Rr636160	regulatory region 636160	925 bp proximal
Tssr58075	transcription start site region 58075	1973 bp downstream
Tssr58076	transcription start site region 58076	1868 bp downstream
Tssr58077	transcription start site region 58077	1789 bp downstream
Tssr58078	transcription start site region 58078	878 bp downstream
Tssr58079	transcription start site region 58079	659 bp downstream
Tssr58080	transcription start site region 58080	312 bp downstream
Tssr58081	transcription start site region 58081	115 bp upstream
Tssr58082	transcription start site region 58082	464 bp upstream