rs219579397 SNP Detail

Summary

• ID
  rs219579397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6259815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA GCCACATGCC TCTCTTGTGG
  R
  GGCTGTGGGA GCGGTAACTT TGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320210420	CHEV_2_6176050	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219579397					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6259815 () rs orientation: forward

Symbol	Name	Function Class
A230108P19Rik	RIKEN cDNA A230108P19 gene	within coordinates
Gm13383	predicted gene 13383	366 bp downstream
Gm46730	predicted gene, 46730	1834 bp upstream
Rr551353	regulatory region 551353	1297 bp proximal
Rr551354	regulatory region 551354	1344 bp proximal
Tssr22443	transcription start site region 22443	1280 bp downstream