rs219586647 SNP Detail

Summary

• ID
  rs219586647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115220202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGGTCA GCCTGTTCCG
  GGAGACCTTC TTTGCCGGCC CAGTCTTGGG CCTGCTCCTC TTTGTGGTGG GGTTGGCTGT
  CTTCATCCTT TATGAGGTCC AGGTGAGTGG AGAGAGAGGC CACACCCGAC AGGCCCTGGT
  CATCTACTAC AGCTTTAACA TTGTCTGTCT GGGGCTCATG ACTCTGGTCA GCCTGAGTGG
  Y
  TCAGTCATCT ATCGTTTTGA CCGTCGGGCC ATGGACCATC ATAAGAACCC GACACGGACC
  CTGGATGTGG CCCTGCTAAT GGGCGCCGCC CTGGGCCAAT ACGCTATCTC CTACTACTCT
  ATCGTGGCTG TGGTGGTGGG CTCTCCCAGA GACCTGCAGG GGGCGCTCAA CCTGTCCCAC
  GCTCTACTCA TGATCGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323862368	CHEV_11_115190690	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219586647					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115220202 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4123	CpG island 4123	within coordinates
Otop2	otopetrin 2	within coordinates
Rr459849	regulatory region 459849	149 bp proximal