rs219587361 SNP Detail

Summary

• ID
  rs219587361
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113283441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGCTACC GGTAACCTTG TAGTCCAGCG
  CTGCCAATCT GAGTCCTACA GTTTTACTGG AATGCACTGG AACCTCCCCA AACTCAGTTC
  CCTCATTAGG GCCACGCCTC GTCACCCTTC AGTCTCACAT TTCAGCGGAA GCCCCGCCCC
  K
  TACGTTCCTA AGTCCCGCCC TTACCCTGCA GCACTGTGGT GCGCTTTCCC AGCTGTAGCT
  TCATCCCTAG TTTAGCTCCA CCTTCCAGGC TTACCCAAAG CTCCGCCCTT CGTTACTTGG
  GCCCCTCGGG CCCACTCTTC CGGCTGCGGT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910479	CHEV_6_113256474	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219587361					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113283441 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	657 bp upstream
Cpgi17838	CpG island 17838	within coordinates
Cpne9	copine family member IX	909 bp downstream
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	within coordinates
Gm67816	predicted gene, 67816	within coordinates
Rr399829	regulatory region 399829	within coordinates
Rr636483	regulatory region 636483	834 bp distal
Rr636484	regulatory region 636484	167 bp proximal
Rr636485	regulatory region 636485	960 bp proximal
Rr636486	regulatory region 636486	1415 bp proximal
Rr636487	regulatory region 636487	1845 bp proximal
Tssr58189	transcription start site region 58189	470 bp upstream
Tssr58190	transcription start site region 58190	680 bp upstream
Tssr58191	transcription start site region 58191	759 bp upstream
Tssr58192	transcription start site region 58192	1361 bp upstream
Tssr58193	transcription start site region 58193	1387 bp upstream
Tssr62434	transcription start site region 62434	1287 bp downstream