rs219589013 SNP Detail

Summary

• ID
  rs219589013
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108901394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAGAGTA AGAACATTCT
  TCAGGTGTGA GACCTCCCAT TTTAAAACTG GGAAGTCAAC ATGGTGACAT ATGCCTGTAA
  TTCCAGCACA GGAGGTAGAA ACAGGAAGAT CACTGCTGTT TCAAGGACAG CCTGGTCTAT
  AGAGTGAAAT CTGGGCTAGT CAGAGCTCTA CAGAGAGACC CTGTCCCACC CCCATCCCCC
  M
  AAAAAAGGGC ATAAACAACA ATCAAGCACA CAAATCAGGA TGAATTCGTA TTCAAATTTG
  GTAAATCCAG TCTCCCAAAC CATTTCAGGA TTCATGAATA TTTTTTAAAA ATTAATGGTA
  TGATTTTATG GCAATCCTTT GTGGGGTTAG GCTGTCCTTA AATACTAAAG GACTTTTCAT
  CATGACTAGG GGTGAAGGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384648964	MGP_WTSI_11_108871882	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219589013					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384648964	MGP_WTSI_11_108871882	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108901394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4049	CpG island 4049	1074 bp proximal
Gm11668	predicted gene 11668	1787 bp downstream
Gm36876	predicted gene, 36876	within coordinates
Tssr105627	transcription start site region 105627	1147 bp upstream
Tssr105628	transcription start site region 105628	1247 bp upstream
Tssr105629	transcription start site region 105629	1263 bp upstream
Tssr105630	transcription start site region 105630	1301 bp upstream
Tssr105631	transcription start site region 105631	1418 bp upstream
Tssr111515	transcription start site region 111515	1137 bp downstream
Tssr111516	transcription start site region 111516	1203 bp downstream
Tssr111517	transcription start site region 111517	1272 bp downstream
Tssr111518	transcription start site region 111518	1292 bp downstream
Tssr111519	transcription start site region 111519	1305 bp downstream
Tssr111520	transcription start site region 111520	1335 bp downstream
Tssr111521	transcription start site region 111521	1420 bp downstream