rs219595283 SNP Detail

Summary

• ID
  rs219595283
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48652243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGCATTC TGTCTAAACT
  CCACCCCACA ATTCCCTGAC AACAGCCAGG TAGGCCTCAC CCACTATAAA AGGGGCTGCT
  TGCCCCCTTC TCCCGCTCTT GCTCTTCTCT TCTTGCTATC TGCTCCCTTG TCCCTTCCCC
  ATTCCATCCC CTCGCCCCTG CCCCGCTCTC TCCACATGCC CATGGCTGGC CTTTACTTCT
  K
  TACTCTCTAA CCCCTCTGCG TTTCTCTGCT TCTTCTACCC TCTTGACTTC CCTCCCCATG
  CCCTGAATAA ACTCTATTCT ATATTATACC GTCGTGTGGC TGGTCCCTCA GGAACAAGTG
  ATGCCTTGGA ATGGGACTGC TGGGACAACT CCTCCCATAC CTCACTACAC CTTCCATAGA
  GCATATCCCT CCTTCTCTCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368226763	MGP_WTSI_6_48625308	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219595283					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368226763	MGP_WTSI_6_48625308	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48652243 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	841 bp upstream
Gm46958	predicted gene, 46958	523 bp downstream
Rr629719	regulatory region 629719	35 bp distal
Rr629720	regulatory region 629720	339 bp proximal
Tssr56160	transcription start site region 56160	476 bp downstream
Tssr56161	transcription start site region 56161	100 bp downstream
Tssr56162	transcription start site region 56162	805 bp upstream
Tssr56163	transcription start site region 56163	851 bp upstream
Tssr56164	transcription start site region 56164	884 bp upstream
Tssr56165	transcription start site region 56165	1099 bp upstream