rs219605231 SNP Detail

Summary

• ID
  rs219605231
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:117661111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAACATT CCCGTGGACC
  CACGCAAATA AATAGCTCTG CCACCTCAGA AGCATCTCTA ACCACAGGGC TTCACTAAGA
  TGGGGATTTT CCAAGGGAGT CCTGGGATAC AAAGCCTAGA AAAAAAGAGG CTACCTGGAG
  AGTTTAGAGC AATTCCAGAC TATTTTGATA GACAACTTCC AATCTCAACA CTCCATTCTC
  M
  CGTTTGTACG TTTCACACTG ATCTGAACAT AAAGTGTGTG TATAATGAAG AAAAGAAAAG
  AAAAAAAAAA CAGTATTGGG ACTCTGGATG GCTCAGTAAG GTGCTTGCTA TGGGACCCGT
  TGACCTGGAT TCAATCCCCT GGACCCCACA TGGTGGCTGA GCTCTGATCT CCAATTGTGC
  ACAAAGGAGA GTATGTATGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359390977	MGP_WTSI_3_117570380	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219605231					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359390977	MGP_WTSI_3_117570380	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117661111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13747	CpG island 13747	1038 bp proximal
Gm56798	predicted gene, 56798	1555 bp upstream
Rr583873	regulatory region 583873	1396 bp distal
Rr583874	regulatory region 583874	168 bp distal
Rr583875	regulatory region 583875	1464 bp proximal
Rr583876	regulatory region 583876	1714 bp proximal
Rr583877	regulatory region 583877	1728 bp proximal
Snx7	sorting nexin 7	Intron
Tssr31404	transcription start site region 31404	1558 bp upstream
Tssr35382	transcription start site region 35382	1443 bp downstream
Tssr35383	transcription start site region 35383	1468 bp downstream