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rs219611530 SNP Detail
Summary
  • ID
    rs219611530
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:49024072 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TACAGAACCT ATTAAAACTC
TTGCAGATAC CTCACCATGA CATTAAATGA GTCCTAAGGG AAGAGTATGC ATTTCATGTG
CAAATCGTTT AAACCGAATA GCCTTCATCT ATAAATTAGG AACTGGCTGG ATTGCCCCTC
TGTGGAGCTC TTTCACTTTA AGCAGCTGTG AGCAGTTGTT ACCTGTATGC AAGCAGAAAG
Y
TGCTTCATCG GGTTTTGCAT CAAGGCCGGC ACCAGCTCCC TTTCAGGAGC GTCCAGCCTG
TTCTCTTCGC AGAGCAACCT TTAACCTTTC AGAAACAACT CTGCCTAAAG ATCATGTGAT
GTTACCAGTA ACTCAAAATG TCCATCTTTT CACAGGCCAG TATTTCCAAA AACTGGGTCG
GTGTTCAGCA CGGGTTTCTA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368235213 MGP_WTSI_6_48997137 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219611530 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss368235213 MGP_WTSI_6_48997137 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:49024072 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D6Dcr8 DNA Segment, Chr 6, Derry C. Roopenian 8 688 bp distal
D6Mit142 DNA segment, Chr 6, Massachusetts Institute of Technology 142 700 bp distal
Gm56981 predicted gene, 56981 within coordinates
Gpnmb glycoprotein (transmembrane) nmb within coordinates
Tssr56319 transcription start site region 56319 1821 bp downstream
Tssr56320 transcription start site region 56320 1781 bp downstream
Tssr56321 transcription start site region 56321 1767 bp downstream
Tssr56322 transcription start site region 56322 1749 bp downstream
Tssr56323 transcription start site region 56323 1713 bp downstream
Tssr56324 transcription start site region 56324 1683 bp downstream
Tssr56325 transcription start site region 56325 1527 bp downstream
Tssr56326 transcription start site region 56326 1512 bp downstream
Tssr56327 transcription start site region 56327 1458 bp downstream
Tssr56328 transcription start site region 56328 1380 bp downstream
Tssr56329 transcription start site region 56329 1304 bp downstream
Tssr56330 transcription start site region 56330 1133 bp downstream
Tssr56331 transcription start site region 56331 1088 bp downstream
Tssr56332 transcription start site region 56332 1015 bp downstream
Tssr56333 transcription start site region 56333 977 bp downstream
Tssr56334 transcription start site region 56334 967 bp downstream
Tssr56335 transcription start site region 56335 947 bp downstream
Tssr56336 transcription start site region 56336 920 bp downstream
Tssr56337 transcription start site region 56337 897 bp downstream
Tssr56338 transcription start site region 56338 881 bp downstream
Tssr56339 transcription start site region 56339 867 bp downstream
Tssr56340 transcription start site region 56340 677 bp downstream
Tssr56341 transcription start site region 56341 417 bp downstream
Tssr56342 transcription start site region 56342 385 bp downstream
Tssr56343 transcription start site region 56343 154 bp upstream
Tssr56344 transcription start site region 56344 168 bp upstream
Tssr56345 transcription start site region 56345 186 bp upstream
Tssr56346 transcription start site region 56346 223 bp upstream
Tssr56347 transcription start site region 56347 261 bp upstream
Tssr56348 transcription start site region 56348 287 bp upstream
Tssr56349 transcription start site region 56349 610 bp upstream
Tssr56350 transcription start site region 56350 637 bp upstream
Tssr56351 transcription start site region 56351 667 bp upstream
Tssr56352 transcription start site region 56352 680 bp upstream
Tssr56353 transcription start site region 56353 749 bp upstream
Tssr56354 transcription start site region 56354 764 bp upstream
Tssr56355 transcription start site region 56355 789 bp upstream
Tssr56356 transcription start site region 56356 807 bp upstream
Tssr56357 transcription start site region 56357 819 bp upstream
Tssr56358 transcription start site region 56358 837 bp upstream
Tssr56359 transcription start site region 56359 852 bp upstream
Tssr56360 transcription start site region 56360 889 bp upstream
Tssr60846 transcription start site region 60846 1746 bp upstream
Tssr60847 transcription start site region 60847 1663 bp upstream
Tssr60848 transcription start site region 60848 730 bp upstream
Tssr60849 transcription start site region 60849 191 bp downstream
Tssr60850 transcription start site region 60850 246 bp downstream
Tssr60851 transcription start site region 60851 716 bp downstream
Tssr60852 transcription start site region 60852 759 bp downstream
Tssr60853 transcription start site region 60853 769 bp downstream
Tssr60854 transcription start site region 60854 788 bp downstream
Tssr60855 transcription start site region 60855 821 bp downstream
Tssr60856 transcription start site region 60856 859 bp downstream
Tssr60857 transcription start site region 60857 888 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory