rs219612280 SNP Detail

Summary

• ID
  rs219612280
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89257652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGTGGAG ATTGTGCGGG
  CCAGTTCTTC CGGCTCACCC AATCCCGGAT GCCTGCGAAG CACCAGCCGC AGGAGCGTGC
  ATCACACTTT ATTAAGCAAG AAGGCGGGCA GCATCCCTTC AATCGCCATA CACAGCGTCG
  TCGTTGCTGT CGCTGTGGGC GGATGACGAG AGCTCTTCGC GGGGCGTGCA CACCGGGCAG
  W
  GCCGTTGCAT GTCGTCCCAG CACGACCGGC AGTACAGGGC CTTGCAGTCT GGTGTGGGGC
  ACACGTAGGA ATCCGGCGTC TCCATTGCCT GGCACACCAC ACAGCGCTGA CGCATGAAGC
  GGTGCAGGAG AGGGCACCGG CGATACAGAG CCTCCACCAG GTAGTGGGGC TGTTGGAAGA
  TGAGGTGGAT TGGTTAATGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358811007	MGP_WTSI_3_89154267	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219612280					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358811007	MGP_WTSI_3_89154267	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89257652 () rs orientation: forward

Symbol	Name	Function Class
Adam15	ADAM metallopeptidase domain 15	63 bp upstream
Cpgi13424	CpG island 13424	within coordinates
Dcst1	DC-STAMP domain containing 1	Coding-NonSynonymous
Gm66683	predicted gene, 66683	within coordinates
Rr397787	regulatory region 397787	102 bp downstream
Rr580053	regulatory region 580053	1992 bp distal
Rr580054	regulatory region 580054	397 bp distal
Rr580055	regulatory region 580055	279 bp distal
Tssr34120	transcription start site region 34120	386 bp upstream
Tssr34121	transcription start site region 34121	344 bp upstream