rs219612680 SNP Detail

Summary

• ID
  rs219612680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4746832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTTTCA GGGATCAGAA
  GATGTCCACC ACTAGGCTGG GGGGGCGAGG AGGGGCGCCC TTCTTAATGG AAACTGGAGC
  TGAATTCCTG CCCTGCTGGA CAGGGAGGGG CCGTGGGGGT GCAGAGAGAA AGAGAAGGCC
  AGGGGTCAAG CCTGGGGAGG GACCCACTTG GCCCAAAAGG TGGGCTGCAG GGTGTCCTGA
  R
  AGAGGGGTGC TGTGAGGGGG AGGCATTGGG CATAGAGCGG GACTAGCACC CTTTGGGCAC
  GCCCTGGTAC CCCGGAACCC GAGTGGGGGA GTGTGAGGCG GCGGCCTGTG GGCCCCTGAA
  CCTCCATGTC GCGCGCAGGC CACTAACCTG TCAGTAAGAA TGTGCCAGTG GTCGCGGGGC
  TCATCTTGAG TGTCCCCCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367234331	MGP_WTSI_6_4696832	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219612680					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367234331	MGP_WTSI_6_4696832	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4746832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17126	CpG island 17126	within coordinates
Peg10	paternally expressed 10	474 bp upstream
Rr146220	regulatory region 146220	within coordinates
Sgce	sarcoglycan, epsilon	within coordinates
Tssr1771	transcription start site region 1771	466 bp upstream
Tssr1772	transcription start site region 1772	599 bp upstream
Tssr1773	transcription start site region 1773	610 bp upstream
Tssr54763	transcription start site region 54763	528 bp upstream
Tssr54764	transcription start site region 54764	778 bp upstream
Tssr59724	transcription start site region 59724	437 bp upstream
Tssr59725	transcription start site region 59725	186 bp downstream
Tssr59726	transcription start site region 59726	213 bp downstream
Tssr59727	transcription start site region 59727	234 bp downstream
Tssr59728	transcription start site region 59728	338 bp downstream