rs219616086 SNP Detail

Summary

• ID
  rs219616086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156959804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGCTTATT CTCACCTCTG TACCAGGCAC GAAAGTGATC
  ACACACATGT GCATTCAGGC AACACTTATA GAAAATAAAA TACATAATTT TAAAAATCCT
  R
  TGAAATTGGA TCTGGGAAAT AATTTTCTTA AAAAGTGTGA AACAGAATCT AGGAAGATTC
  ATTATATATG GGAAGTTTGA AAGTGTTAAT AAATTTAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584288	CHEV_2_156943620	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219616086					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156959804 () rs orientation: forward

Symbol	Name	Function Class
Rr568436	regulatory region 568436	600 bp distal
Rr568437	regulatory region 568437	736 bp distal
Rr568438	regulatory region 568438	335 bp distal
Rr568439	regulatory region 568439	1147 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27144	transcription start site region 27144	1708 bp downstream