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rs219616176 SNP Detail
Summary
  • ID
    rs219616176
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    ChrX:73348509 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTCACTCAT TTCTGCACTG
    AACAGTAGAT TTTTTTTTCT TGACTGAAGG GAAGAAGTGC TCAGATGTAG TCCAGTCATG
    CAAGAGGTGA GAGAGGAAGG GTGGGAGGGT CTTCAGTAAG CTGATACTCT TAACAAACCT
    ACTTAGAGTA GAGGCTTGTT ACTTTTCCTG GCCTTGGGAG GAATCCTGAC AATGGTAGCT
    S
    CGCTACTGTG CAACAACACA CAGCAGGGCT TCCATACCTT GTGTTTCTCC CAGGGGGCGG
    TACGGGAGCG CGCGGGGCGG GGCGGGGCGC GCGCGGCTCC CGCGCAAGGA TCTTTCGGAG
    GACTCAGCAC CTGCTGCCGG CCTGCCCCGC CCCGTATTTT TCTGGGCTCA CGAAGAGCCC
    CGATAACCCC TGCAGTCATT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss403782923 MGP_WTSI_X_71550242 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C G C C C C C C G C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219616176 SNP C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C G C C C C C C G C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss403782923 MGP_WTSI_X_71550242 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:73348509 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Atp6ap1 ATPase, H+ transporting, lysosomal accessory protein 1 212 bp downstream
Cpgi22795 CpG island 22795 18 bp proximal
Gdi1 GDP dissociation inhibitor 1 109 bp upstream
Rr692006 regulatory region 692006 within coordinates
Rr692007 regulatory region 692007 106 bp proximal
Tssr161327 transcription start site region 161327 1070 bp downstream
Tssr161328 transcription start site region 161328 1015 bp downstream
Tssr161329 transcription start site region 161329 919 bp downstream
Tssr161330 transcription start site region 161330 867 bp downstream
Tssr161331 transcription start site region 161331 732 bp downstream
Tssr161332 transcription start site region 161332 712 bp downstream
Tssr161333 transcription start site region 161333 89 bp upstream
Tssr161334 transcription start site region 161334 189 bp upstream
Tssr161335 transcription start site region 161335 336 bp upstream
Tssr163632 transcription start site region 163632 212 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory