rs219618145 SNP Detail

Summary

• ID
  rs219618145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63217892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAAACAA CCAAACCACA
  CAGAGAAATG ACAACGACAA CCAAACAGCT TTGAAGAATT ATATATATAA CTTTTCCTTT
  GATAGATCCT GCTCTTGGAC ACTGGTAACT TTGGCAGCAG AACGGAAAGG GATTGTGTCC
  CATTTTATAG GTGGAGGGAT GGAAAGGGGG CAGTTAAAAT CTGCTCGCTT CCCACTGGAT
  Y
  TCAGGCCAGA ATGGATCAGC AAGGTCCTGA GAACTCAGTG GTGGGGACCA AGTCGGATTC
  AGACTAATAT CACAGAACGT TGGACATGGC TCAGATTGTA AGAGTGCTTG CAAGCAAGGT
  TGACCATCTA GTGTGATCCA CCTGAAGGTT GCCACAACAC ACTAAAAAAC CCAAACAAAC
  AAAAAACAAA AAAACAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323333513	CHEV_10_62844861	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219618145					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63217892 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1649	CpG island 1649	258 bp distal
Cpgi1650	CpG island 1650	219 bp proximal
Dnajc12	DnaJ heat shock protein family (Hsp40) member C12	330 bp upstream
Gm66647	predicted gene, 66647	within coordinates
Rr215754	regulatory region 215754	709 bp proximal
Rr224928	regulatory region 224928	within coordinates
Rr369009	regulatory region 369009	within coordinates
Tssr97916	transcription start site region 97916	631 bp downstream