rs219620220 SNP Detail

Summary

• ID
  rs219620220
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79441028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGGGCTG ATTTGGTTTG
  GCTAGCATGC CTGAGGCCTG ACATTTAGTC CCCAGCACCT CACAAACTGA GTGGTAAAGC
  ACACCGGTCT CAGCACTAGG GATGCAGAGA CCGTCTGAGA GCAGCCTGAG GTGCACGAGA
  CTGCCTTTAA AAAATAGTAA TAATAAAATA AATGATATTT TGGCTTAAAA CTTCAATCTG
  K
  ACTTAACTAG TATGTAAGGA AGGATCATAA AACACTTTTT TTTTTAAAGA GGGGAGGTAT
  ACTAAGATAG AACCCAGGGC TTTATACATG CTAGGCAAGT ATTCTAACCA TTGTACTATA
  CCGCCAGCTG TCATGACATT CTTTTTCAAC ATTATACACA TACTTAGTAG TTTAGCCACA
  AAACTGCTAT TTCCAAAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358583937	MGP_WTSI_3_79337643	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219620220					SNP	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358583937	MGP_WTSI_3_79337643	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79441028 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	948 bp distal
Rr375221	regulatory region 375221	within coordinates
Rr578538	regulatory region 578538	1330 bp distal
Tssr29583	transcription start site region 29583	1698 bp downstream
Tssr33708	transcription start site region 33708	1993 bp upstream
Tssr33709	transcription start site region 33709	1975 bp upstream
Tssr33710	transcription start site region 33710	1937 bp upstream
Tssr33711	transcription start site region 33711	1917 bp upstream
Tssr33712	transcription start site region 33712	1879 bp upstream
Tssr33713	transcription start site region 33713	1835 bp upstream
Tssr33714	transcription start site region 33714	1634 bp upstream
Tssr33715	transcription start site region 33715	1546 bp upstream
Tssr33716	transcription start site region 33716	876 bp upstream