rs219620452 SNP Detail

Summary

• ID
  rs219620452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36348738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCGCTAA CAGAGCTTGG
  CAGAGGTGCT GAGGGTGGGC TGTGGCTGGT GCTGTGTCCT GGATCCTCAG ACTCCTGTCC
  AGCTGTCCTC AAGGCTGGCT CTTGGTAGGA CTGTCCCCCC CCCCCCCCCA AACTGCCTAC
  TGGAGCAAGC CCAAGGAGGA GAATGCCAGG CAGTTGGCTT CTGCCATAGA GTGGACTGAC
  Y
  GCTTCAAAGG CTGTCTTTGT TTCCTCTCCA GCTTGAGCTA AGTGAAACTT AAGCCAACAA
  CCTCAGGCAA GGGGGTGGGG CTGTGTCTAC TGGTTGTTAT TGAGGTTGCT GTTGCCGTTA
  TTGTTGTAAT TGACGCAGTG TTCCCAGCCA GTGAGTTTTC ATGAAAGGAA GTGTCACTTC
  CTTGCCATCA CAAGAAGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349247608	MGP_WTSI_1_36366502	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219620452					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349247608	MGP_WTSI_1_36366502	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36348738 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Cpgi139	CpG island 139	1088 bp distal
Rr366864	regulatory region 366864	1491 bp downstream
Rr395991	regulatory region 395991	1824 bp downstream
Rr409284	regulatory region 409284	1878 bp distal
Rr409285	regulatory region 409285	within coordinates
Rr409286	regulatory region 409286	1129 bp proximal
Tssr6253	transcription start site region 6253	1922 bp downstream
Tssr6254	transcription start site region 6254	1894 bp downstream
Tssr6255	transcription start site region 6255	1878 bp downstream
Tssr6256	transcription start site region 6256	1582 bp downstream
Tssr6257	transcription start site region 6257	1508 bp downstream
Tssr6258	transcription start site region 6258	1376 bp downstream
Tssr11252	transcription start site region 11252	34 bp upstream