rs219623538 SNP Detail

Summary

• ID
  rs219623538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:95249186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAAAAAG AAAAAGAAGA
  GAAAGTGAAA TAGTTATTAT TAAGAATTTT TAGAGTATGG TCTGTACTTG GCAGTCGTTT
  TTCTAGTCGG TTTGCTTTGT TTGAGACAGG GCAGCCTGTA GCCCAGGCTG GCCTCAATTT
  TACTTTGTAG CCAAGGATAA CCTTGAACCT TCTTGTTCTT CTTCACTCAC CTCCCAAGTC
  Y
  TGGGATTTAT AAACCTGTAC CACAGTGCTC AACTAATTTC TCTTGTTACA CCTTTTTTTT
  TTTTTTTTAA AGCCTGTGAG TTAAAGTTTA CCAAGGCCTA CCACAAATCT CTGGGTAAGT
  ATTTAATAAA AACTTAAGTC CATTCTAGGC ACAACTGTAA AGCAATTTTT TTCTTTTCAA
  ATGATTTTCT GTAGCTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381349690	MGP_WTSI_10_94875958	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	C	T	T	T	T	C	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219623538					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	C	T	T	T	T	C	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381349690	MGP_WTSI_10_94875958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:95249186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2139	CpG island 2139	982 bp proximal
Gm33230	predicted gene, 33230	778 bp upstream
Rr225467	regulatory region 225467	214 bp proximal
Rr385140	regulatory region 385140	1514 bp upstream
Socs2	suppressor of cytokine signaling 2	within coordinates
Tssr95356	transcription start site region 95356	1548 bp downstream
Tssr95357	transcription start site region 95357	1276 bp downstream
Tssr99030	transcription start site region 99030	269 bp downstream
Tssr99031	transcription start site region 99031	1870 bp downstream
Tssr99032	transcription start site region 99032	1961 bp downstream