rs219625918 SNP Detail

Summary

• ID
  rs219625918
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113617374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTAGTCC AGGCTGGCCT
  AGAACTCATT ACCTAGCTAA GAATGACCTT GAATTTCTGG TCTTCCTAGT GACCTCTCTC
  GAGTTGCTGG GATTATGTGT CACCATGCCT GACTTCAGTA ATATATTGTT TAATTAAGAT
  GTTTACGATA CTGGAGGCTG GCAAGATTGC TCAATGGGTG GAGGCACTGA ATATCAAGCC
  T
  GTGGACCCGT GTTTTATCCC TGGAACCCTT GTAAAGCTAG AAGGGGAGAG CCCACTCCAC
  ACAGTTGCCC CGTGACCCTA CCCAGGCGCA CTTACTACAA TGAGTATCTA TTACACAGCT
  ATACTTGATA CATAAAGTGG ACATGTCTTG TGTTGTCCTG CCAGTTTGGA TATATATTAT
  GCATGCGAGG AATCGGATGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911263	CHEV_6_113590407	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219625918					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113617374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17852	CpG island 17852	1643 bp distal
Gm43964	predicted gene, 43964	149 bp downstream
Irak2	interleukin-1 receptor-associated kinase 2	within coordinates
Rr399834	regulatory region 399834	1836 bp downstream
Rr636556	regulatory region 636556	1875 bp distal
Rr636558	regulatory region 636558	1957 bp distal
Rr636559	regulatory region 636559	880 bp distal
Tssr58237	transcription start site region 58237	1869 bp downstream
Tssr62463	transcription start site region 62463	1036 bp upstream