rs219634700 SNP Detail

Summary

• ID
  rs219634700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13442948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCTTACC GGTACCCGGC
  AGGTCAGTTC CTGCCTTCCA TTGGCTCACT GCCCCATCAG TCAGGCACAG CCAGATTCGG
  GTCGGTGGGA GGGGAAGGAG TCGGAGGAGG TGGAGTGGGA GTGGGATTAG AGGACGAGGT
  GGCGGAGGAG GGTGCTCGAG CTCAGGCTCG GGTTTGGGAA AGTTTCCCCT GCCAGTGACA
  R
  GCCCTCTAGG CTTGAGGCCC AACGTCACTC CCGGAGAGTA AGGGGCTCGG GTCCCCGATT
  CCCGCCCCTC AGTCCGCAGG CCCCGGAAGC CACTTGGGGG AGGGGAAAGG GAGGGACCAT
  GGAAGCAGGG ACCGAGCCAC CCCCGAGCGC GGCCGCGGCG CCTCCAGGAC TCCCCCAGGG
  GCGGGGTGCG GGCACTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348676300	MGP_WTSI_1_13362805	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219634700					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348676300	MGP_WTSI_1_13362805	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13442948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi41	CpG island 41	within coordinates
Gm29570	predicted gene 29570	within coordinates
Gm70663	predicted gene, 70663	1504 bp downstream
Ncoa2	nuclear receptor coactivator 2	within coordinates
Rr395968	regulatory region 395968	16 bp downstream
Rr407893	regulatory region 407893	296 bp distal
Rr407894	regulatory region 407894	215 bp distal
Rr407895	regulatory region 407895	within coordinates
Rr407896	regulatory region 407896	948 bp proximal
Rr407897	regulatory region 407897	1349 bp proximal
Rr407898	regulatory region 407898	1535 bp proximal
Rr407899	regulatory region 407899	1983 bp proximal
Tssr5965	transcription start site region 5965	192 bp upstream
Tssr10989	transcription start site region 10989	267 bp upstream
Tssr10990	transcription start site region 10990	918 bp downstream
Tssr10991	transcription start site region 10991	1155 bp downstream
Tssr10992	transcription start site region 10992	1303 bp downstream
Tssr10993	transcription start site region 10993	1348 bp downstream
Tssr10994	transcription start site region 10994	1397 bp downstream
Tssr10995	transcription start site region 10995	1496 bp downstream
Tssr10996	transcription start site region 10996	1672 bp downstream
Tssr10997	transcription start site region 10997	1708 bp downstream