rs219649245 SNP Detail

Summary

• ID
  rs219649245
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118406459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA CAAAGAAACT AATAAAACTT
  W
  AAAAAAAAAA ATGGTACTGG TGTGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	SWR/J
ss640914926	FVB_NJ_5_118718403	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	A	T	T	T	A	T	T	A	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	SWR/J
rs219649245					SNP	T	T	T	T	T	T	T	T	T	T	T	A	A	T	T	T	A	T	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640914926	FVB_NJ_5_118718403	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118406459 () rs orientation: forward

Symbol	Name	Function Class
Gm25076	predicted gene, 25076	1814 bp downstream
Gm73266	predicted gene, 73266	849 bp upstream
Rr618847	regulatory region 618847	1881 bp distal
Rr618848	regulatory region 618848	431 bp proximal
Rr618849	regulatory region 618849	800 bp proximal
Rr618850	regulatory region 618850	871 bp proximal