rs219650912 SNP Detail

Summary

• ID
  rs219650912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132459445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCTGAC TCCGGGGACA
  CGGATGAGTC AAGCCGGACC CTCTTCAGTC CTTGACGGGG AAGCAAACGT TCGCAGAAGA
  CAGAAATGAA CAAGAAAGGT GAGGGGCATC TCTGACTCCA AGACCCTGAT GTTCCCTTCC
  TCTGTTCCTG GCCCTGTGTT TTCATCTCCG CCCAAGGAAA GAAGACTGAA CTGGTTCTGA
  Y
  GGCTGTCAAC CCACTTTTTC AAAGGGCCGG GCACTCACCT ATACAGGTAG CCGAGCTGCA
  GCAGGTGCAG CAGAGCCAGG AAAGGACGCG AGAGCTGCGA ATGGTGCAGC TCGGTGGGAT
  CAGCTGTCAG CCAGAGCCAG CTGAAGAGCT GCAGCAGCAC CGAAGCTTGG CCCAGCAGGA
  CCAGTACCAG CGCGGCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321335965	CHEV_4_132288049	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219650912					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132459445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	67 bp proximal
Cpgi14970	CpG island 14970	1323 bp proximal
Rr398540	regulatory region 398540	423 bp upstream
Rr601049	regulatory region 601049	300 bp proximal
Rr601050	regulatory region 601050	385 bp proximal
Rr601051	regulatory region 601051	402 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	832 bp downstream
Tssr39417	transcription start site region 39417	291 bp downstream
Tssr43695	transcription start site region 43695	413 bp upstream
Tssr43696	transcription start site region 43696	293 bp downstream
Tssr43697	transcription start site region 43697	380 bp downstream
Tssr43698	transcription start site region 43698	431 bp downstream
Xkr8	X-linked Kx blood group related 8	within coordinates