rs219652167 SNP Detail

Summary

• ID
  rs219652167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152685638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC CAGCATTTTA CCTACAGAAC
  R
  TCTCCCCAGC CTCCACCACC TCCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068371	CHEV_1_154657017	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219652167					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152685638 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	1987 bp distal
Rr420548	regulatory region 420548	within coordinates
Rr420549	regulatory region 420549	130 bp proximal
Tssr9426	transcription start site region 9426	1989 bp downstream
Tssr9427	transcription start site region 9427	1971 bp downstream
Tssr9428	transcription start site region 9428	1953 bp downstream
Tssr9429	transcription start site region 9429	1928 bp downstream
Tssr9430	transcription start site region 9430	220 bp upstream
Tssr9431	transcription start site region 9431	1529 bp upstream
Tssr9432	transcription start site region 9432	1724 bp upstream
Tssr14234	transcription start site region 14234	1574 bp upstream
Tssr14235	transcription start site region 14235	37 bp downstream
Tssr14236	transcription start site region 14236	722 bp downstream