rs219653404 SNP Detail

Summary

• ID
  rs219653404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12771040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCTCCAC AAGTTCCCAC
  AACATAGTCC CCAAGAACCT CTACTCCCAT AACCCTTGCT TCCAAGAACC CTGAGCACCT
  TAAACCTGAG GTTTTCTATC TCTAGTCATT ATCTCCACTC ACTACTGTTT ATCTGTCCAC
  CGCAATTCAA GGACCATGAC ACCGGCCCCC CAACACTAAG TCACCCCTTC TCATCAACCA
  Y
  CCACCTCCAC TGTCCTTCCT CGTCTCCATC TTATTACAAG CCCAAGATCC CATCTCATCC
  TTGAGATTTC CTGTATGGTA GCTTAAATTG ACCCACACTC ACATTTTTTA GTTCCTGTAA
  CCTTCTTTTC TCCCTCCTCT TCACCTCAAA CTCAAAATTG CTCTGCCTGA CCCTCTGGAC
  CTGAGTCTTG GGCCACGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370654973	MGP_WTSI_7_13622462	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219653404					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370654973	MGP_WTSI_7_13622462	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12771040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18334	CpG island 18334	1994 bp distal
Cpgi18335	CpG island 18335	226 bp proximal
Gm71833	predicted gene, 71833	865 bp upstream
Rr400106	regulatory region 400106	1100 bp upstream
Rr642444	regulatory region 642444	1816 bp distal
Rr642445	regulatory region 642445	375 bp proximal
Rr642446	regulatory region 642446	532 bp proximal
Rr642447	regulatory region 642447	876 bp proximal
Rr642448	regulatory region 642448	1150 bp proximal
Tssr64535	transcription start site region 64535	561 bp upstream
Tssr64536	transcription start site region 64536	883 bp upstream
Tssr70649	transcription start site region 70649	1647 bp upstream
Tssr70650	transcription start site region 70650	1578 bp upstream
Tssr70651	transcription start site region 70651	451 bp upstream
Tssr70652	transcription start site region 70652	546 bp downstream
Tssr70653	transcription start site region 70653	571 bp downstream
Tssr70654	transcription start site region 70654	708 bp downstream
Tssr70655	transcription start site region 70655	720 bp downstream
Tssr70656	transcription start site region 70656	849 bp downstream
Tssr70657	transcription start site region 70657	1088 bp downstream
Tssr70658	transcription start site region 70658	1198 bp downstream
Ube2m	ubiquitin-conjugating enzyme E2M	within coordinates