rs219661125 SNP Detail

Summary

• ID
  rs219661125
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43443927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAACTGT CTATACCAAA
  GTGGCATGTG CATATCATAA AACTTTTTTT AATTAAATAC AATGATAATT TCGTAATATT
  GAACATTTAA GGGAACTGGA AAATAATTTA AATTATTAAA TATAACCAGT GGGGTAAAGT
  GAAAGGACAG AATACAAGAA GGAGAAAGAA AAATAGGAGC GATGAACAGA ACCAGGCCTC
  R
  GGTGCAGAGT CTGCACGCAC TACAATAATT GCTCAAAGAC TTACCAAATC CATGGCAGCA
  AGACTGTGAC CTGTCTGTCT TTATTTTTCT CTTCAAACCT AGTCAACATG GGGATATGGC
  GTTCTCTCCT GCAGAGCAGA ACAAATTTTC TAAATTTCTA GTGACACAAG ACACGAGATG
  ATGGAAAATG AATAGACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320267191	CHEV_2_43409435	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219661125					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43443927 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	1414 bp upstream
Rr556278	regulatory region 556278	673 bp proximal
Rr556279	regulatory region 556279	1122 bp proximal
Rr556280	regulatory region 556280	1450 bp proximal
Tssr17589	transcription start site region 17589	1406 bp upstream
Tssr17590	transcription start site region 17590	1430 bp upstream
Tssr17591	transcription start site region 17591	1447 bp upstream