rs219662512 SNP Detail

Summary

• ID
  rs219662512
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32111156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGCTGC AGCCGCGTGA
  AGTGCTGCAG CGCGAACTCC AGCAGGTCGG CGGGCTGGTG CCTCAGCACC TCCACCGTGA
  AGCCCTGCAG CAGCTCCGTG AGCCCCGCGG GGATCTCGAT GCTCATCCTG CCCGTGCACG
  CCGAGGCGCC TGGACGCCGC CCTCGCCCCC TATCCGCGGT CCGGTCTCGG GCTGCGCGGC
  Y
  CCCGAGCGAG CGCCCCGGGC GCTACCGGCT GCGAGCGCGG CGCACTGGGC CCCCGGCGAG
  GCTGCTCCGT GCGGCGGCAG CAGCAGAGCG AGCACAGCCC GGGGAGGGTT GGCAGCATCT
  CCAGCTCCTC CCGCTCCTGC TCCCGCCGCC GCTGCGCCGC CCCCCGCCCG GCGCCCCGCC
  TCCGCCCGCG CGCCCACGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385502470	MGP_WTSI_12_32746022	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219662512					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385502470	MGP_WTSI_12_32746022	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32111156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4539	CpG island 4539	within coordinates
Gm51992	predicted gene, 51992	1062 bp downstream
Gm60244	predicted gene, 60244	1564 bp upstream
Prkar2b	protein kinase, cAMP dependent regulatory, type II beta	within coordinates
Tssr113126	transcription start site region 113126	1167 bp downstream
Tssr116073	transcription start site region 116073	206 bp upstream
Tssr116074	transcription start site region 116074	37 bp downstream
Tssr116075	transcription start site region 116075	64 bp downstream
Tssr116076	transcription start site region 116076	148 bp downstream