rs219663092 SNP Detail

Summary

• ID
  rs219663092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40505901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGCTTAA TCCTCTTAGG
  AGACAAATGA AACAGGCAAT ATCAGGTTTA ATAAATGGTG TGAGGGGAGA AATATTCAGA
  AATTTATCTA AGAACATCTT CAGTTATCGC ATCAGTGAAT GACCCATTTA TGCAGATTTG
  GGGAATAGTT CACTCTCCCT CATGAGTACA TGCATGTACA TATGTGTGCA CTGATGCATG
  Y
  ACAAGCGCCC ACACACATGC ATGTACACTC ACACTCTTGT GCACACACTC GTGAGTCACA
  CACACAAACA CACACACACA CACACACACA CACACACACA CACACACACA CACACTGCAG
  TCACAAGAAT ATCTGCCTTA GGCACACATT ATGGAAAAGC AGAGAGCCTT CTCCTGGGTA
  CCTCACCAGG AAGTGGAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349351252	MGP_WTSI_1_40523586	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219663092					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349351252	MGP_WTSI_1_40523586	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40505901 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	1326 bp downstream
Il18r1	interleukin 18 receptor 1	within coordinates
Rr16188	regulatory region 16188	901 bp distal
Rr29358	regulatory region 29358	500 bp distal
Rr33590	regulatory region 33590	300 bp proximal
Rr33591	regulatory region 33591	1300 bp proximal
Rr371160	regulatory region 371160	402 bp downstream
Tssr6465	transcription start site region 6465	1043 bp downstream
Tssr6466	transcription start site region 6466	1012 bp downstream
Tssr6467	transcription start site region 6467	766 bp downstream
Tssr6468	transcription start site region 6468	735 bp downstream
Tssr6469	transcription start site region 6469	663 bp downstream
Tssr6470	transcription start site region 6470	630 bp downstream
Tssr6471	transcription start site region 6471	531 bp downstream
Tssr6472	transcription start site region 6472	439 bp downstream