rs219668281 SNP Detail

Summary

• ID
  rs219668281
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60215939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAGGGT CACTGTGGGT
  GTGACCACCA GCCCCAGGAA GATCATAGGC CATAGAGACT ACACACACGG CTACATTCAC
  TGCCAGGGGC AGGTTGGGAG GTAGCCTGGG TTTTAAGAAC TGCTTCAAGC TGCTCTACTC
  ACCCCAGGCC AGTCCTCACC ATCCTTTTGA GGGCCGTGAT TTCTGGATCC CATAGCTGAC
  C
  GCCTTTTGGT ATGCACAGTG CTCATGGTCC TTAGGGACCC TTTCCATCTT ACAGAAGAAA
  GCCACTGTGC CCAACCTCAA ATCAGGCTGC CTTGCCTGGT TTCAGTCCCC CCAAGACTCT
  CCCCCCAAGC ATCAGGCTGA TGTCAGAAGC TGGGGGTGGT GGTAGGGGTG TCAATTCCTC
  CATGGCTGGC TGTGTGACTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325232	CHEV_10_59842908	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219668281					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60215939 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm56993	predicted gene, 56993	1846 bp upstream
Rr368996	regulatory region 368996	1049 bp upstream
Rr432129	regulatory region 432129	within coordinates
Rr432130	regulatory region 432130	856 bp proximal
Tssr93630	transcription start site region 93630	427 bp upstream
Tssr93631	transcription start site region 93631	486 bp upstream
Tssr97724	transcription start site region 97724	62 bp downstream