rs219668504 SNP Detail

Summary

• ID
  rs219668504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:25350654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGAACC GGGAATGGAT
  ATCTTCAGCC CCACTTAGGC CAAATCGGGC TTTCTGCTGG GAACAAGGAA TTGTCACTAA
  CCCCGCCCAG GACCCTGGAC CCACTGGACA TTCCAAACTG CCCTACCCTG GAAATGCTAT
  TAGAACCACT GCCACGGGGA GGGGGAGGGT GGCAAGCTAC CAGCTGTCTC CTATCCCCAG
  Y
  ACTGTTACTC ACGAGCCTCG CCAGGCTGTC AGGCGAGAAG CAGGTGCTCC AGAGCTCGGC
  GGCGTCCGTC ACACTGGGTG GGAGGGGCTG TCAGGCACCG TGCCCGCTAT GCTCCCGCAC
  CCCACATCCC TAGACTCCAC TCACTAGAGG TTGAAGTCGT CGCGGTCCCC GTCTCCACCA
  CTATCCCGCT CGCAGTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353409442	MGP_WTSI_2_25316162	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219668504					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353409442	MGP_WTSI_2_25316162	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25350654 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clic3	chloride intracellular channel 3			1865 bp downstream
Cpgi11321	CpG island 11321			within coordinates
Gm74786	predicted gene, 74786			411 bp upstream
Paxx	non-homologous end joining factor			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr396822	regulatory region 396822			251 bp upstream
Rr553086	regulatory region 553086			1141 bp distal
Rr553087	regulatory region 553087			1444 bp distal
Rr553088	regulatory region 553088			within coordinates
Rr553089	regulatory region 553089			442 bp proximal
Tssr16724	transcription start site region 16724			559 bp upstream
Tssr22977	transcription start site region 22977			264 bp downstream
Tssr22978	transcription start site region 22978			291 bp downstream
Tssr22979	transcription start site region 22979			328 bp downstream
Tssr22980	transcription start site region 22980			351 bp downstream
Tssr22981	transcription start site region 22981			379 bp downstream
Tssr22982	transcription start site region 22982			427 bp downstream
Tssr22983	transcription start site region 22983			465 bp downstream
Tssr22984	transcription start site region 22984			476 bp downstream