rs219673561 SNP Detail

Summary

• ID
  rs219673561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:56676919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTACTGAA GATTTCAAAG TGTCGTCCCT
  AAAGACACTT CTTTCCTCCC Ctttttaatt agaatttata ttatttaaaa caatttttaa
  ttttaaatat aCTTTGACCA TATTCTTCTG CTCCCCTAAT TATTTCCAGA TCGCCCTTCA
  Y
  CCCTACCCAC CCAACTTTCA GTCCTTAAAA AATAATCAAG CAAAAACCCA ATCTAATAAC
  AAAATCGCCC AAAGTCAGGA AAACAAAATA AAATACCATC CTAAAAGAAA CAACAAAACA
  TCAAACTGTA ACCAAATAAA GACATACCaa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319732777	CHEV_1_56694604	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219673561					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:56676919 () rs orientation: forward

Symbol	Name	Function Class
Gm70103	predicted gene, 70103	within coordinates
Hsfy2	heat shock transcription factor, Y-linked 2	325 bp upstream
Tssr11733	transcription start site region 11733	345 bp upstream
Tssr11734	transcription start site region 11734	331 bp upstream
Tssr11735	transcription start site region 11735	311 bp upstream
Tssr11736	transcription start site region 11736	300 bp upstream
Tssr11737	transcription start site region 11737	280 bp upstream