rs219677412 SNP Detail

Summary

• ID
  rs219677412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141938036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAGGCC TGCCAACTTC
  AGAGGCTAGG CATGCACAGA GGTTTCCAAA TCCTCTGAGG GGAAGCCCAG TTGTTAACTA
  GTGGTGGTGG GTCATTCATA TTCTCTCTGC CCAGGAAGGA GCTGAGCCAC TGGTGGATAC
  CAGAACCAGG GTCCAATCCC ATTTAACAAC AGAGAGTGTC AGAAAACCCT AGAGAAGTAA
  Y
  TGGTGGGAGG GGTACAGGGG GGTTACTCAG CAAACTGTAC TTTGCACGTG CGTAAGCCTG
  TCTAGGAAAT AGCTGGCTAG ACCCAGACAG ATCGACCTTC TTCACGAAGT CACAAGCCTG
  GGTCTCATGT TTCCTGTCAC TGCCATAGCT TGGGTCAGAC GAGACAGAGG CACTGCCAAT
  TTAGCCCAGT GGACTACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373450046	MGP_WTSI_7_149570204	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219677412					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373450046	MGP_WTSI_7_149570204	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141938036 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	within coordinates
Gm49369	predicted gene, 49369	1632 bp upstream
Rr381604	regulatory region 381604	1909 bp upstream
Rr658152	regulatory region 658152	12 bp proximal
Rr658153	regulatory region 658153	1516 bp proximal
Tssr70143	transcription start site region 70143	1629 bp downstream
Tssr70144	transcription start site region 70144	824 bp downstream
Tssr70145	transcription start site region 70145	1159 bp upstream
Tssr70146	transcription start site region 70146	1191 bp upstream
Tssr75783	transcription start site region 75783	1579 bp upstream
Tssr75784	transcription start site region 75784	833 bp upstream
Tssr75785	transcription start site region 75785	804 bp upstream
Tssr75786	transcription start site region 75786	763 bp upstream
Tssr75787	transcription start site region 75787	1207 bp downstream
Tssr75788	transcription start site region 75788	1294 bp downstream
Tssr75789	transcription start site region 75789	1317 bp downstream
Tssr75790	transcription start site region 75790	1580 bp downstream
Tssr75791	transcription start site region 75791	1608 bp downstream
Tssr75792	transcription start site region 75792	1629 bp downstream