rs219678126 SNP Detail

Summary

• ID
  rs219678126
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105289714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTCTCGT CGCGATCCTA
  GCAGCAGGTC AGAGATTTGG CGGAAGTGAC ATGCTCTCTG GGCAGAAGAA GCCGGCCACG
  TCGCAGAGAA AAAGGGCGGA AGTGACGTTT GCAGTTGTGG GCAGGACGAG CCTGGAGCTA
  CGCCTTCAAG CTCTTGGGGA GTAGTGAGAG TTTACTTCCG GGGCGACTCT GAGAGCTCTA
  M
  CCTCCCCCCT CCGCCCCCCC AACCCCGCGC CACCCTGCCA CCCCGCCACG GGCGGAAGTG
  ACTAGGGCTG TGCGCCCTTG GCGTGATGGA GCAGCAGCAG CAGCAACTGA GAAACGTGAG
  TGAGAGCGCA GTTGCTCTCT GGGTTAGACG TGCAGTTTGT TTCCAGGGGT ACACGCAAGA
  ACCCGAGGGG GAGACGGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370120	CHEV_7_112789021	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219678126					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105289714 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	91 bp upstream
Cpgi19541	CpG island 19541	within coordinates
Gm22504	predicted gene, 22504	1831 bp downstream
Gm45799	predicted gene 45799	45 bp upstream
Rr400513	regulatory region 400513	within coordinates
Rr652793	regulatory region 652793	441 bp distal
Rr652794	regulatory region 652794	202 bp distal
Rr652795	regulatory region 652795	within coordinates
Timm10b	translocase of inner mitochondrial membrane 10B	within coordinates
Tssr2358	transcription start site region 2358	86 bp downstream
Tssr68382	transcription start site region 68382	within coordinates
Tssr68383	transcription start site region 68383	15 bp upstream
Tssr68384	transcription start site region 68384	276 bp upstream
Tssr68385	transcription start site region 68385	489 bp upstream
Tssr68386	transcription start site region 68386	545 bp upstream
Tssr68387	transcription start site region 68387	1830 bp upstream
Tssr74083	transcription start site region 74083	137 bp upstream