rs219683402 SNP Detail

Summary

• ID
  rs219683402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22715018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCAGGAG ATGCTGGGTT
  TCCATCCCTG CCGGACTAAA GTTAGCCTTT TGGCTTCCTG TTTCCTCTCT GAAAACTTAA
  CCTCTGCCCC ATGCGATGGA CAACGATCTC TTGCCAATAC TTTGAGAAGA CTCAGATCTT
  TCATCTGCAG CCCATCGTCA GAACTCAATC CTTCCAATTG CCCAGGGCCA CACGTAGTCC
  R
  TGTGGATTTG TGTTCTCTCA AACTGTGCCA GACCATAGCT TCTCCTCTCC ATCCCTCCCA
  CCCTCCCTCT TACCTTCCTT CCTCCTCTCC TTTGCTCCCT CCCTCCCTCT CCCTCCTCCT
  CTCTGTCACT TCCTCCCTCT ATCCCACCTC TCCTTCCCCC CTCCCTCCCT CTGTCCCACC
  TCTTCTTGCC CCTCTTGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628395	MGP_WTSI_16_22896341	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219683402					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628395	MGP_WTSI_16_22896341	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22715018 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1882 bp upstream
Rr513336	regulatory region 513336	1938 bp distal
Rr513337	regulatory region 513337	1472 bp distal
Tssr4819	transcription start site region 4819	927 bp downstream
Tssr4820	transcription start site region 4820	311 bp downstream
Tssr137564	transcription start site region 137564	1997 bp downstream
Tssr137565	transcription start site region 137565	1860 bp downstream
Tssr137566	transcription start site region 137566	1851 bp downstream
Tssr137567	transcription start site region 137567	1483 bp downstream
Tssr137568	transcription start site region 137568	1452 bp downstream
Tssr137569	transcription start site region 137569	1431 bp downstream
Tssr137570	transcription start site region 137570	1414 bp downstream
Tssr137571	transcription start site region 137571	1076 bp downstream
Tssr137572	transcription start site region 137572	977 bp downstream
Tssr137573	transcription start site region 137573	967 bp downstream
Tssr137574	transcription start site region 137574	948 bp downstream
Tssr137575	transcription start site region 137575	938 bp downstream
Tssr137576	transcription start site region 137576	253 bp downstream
Tssr137577	transcription start site region 137577	154 bp upstream
Tssr137578	transcription start site region 137578	225 bp upstream
Tssr137579	transcription start site region 137579	1847 bp upstream
Tssr137580	transcription start site region 137580	1897 bp upstream
Tssr140504	transcription start site region 140504	1876 bp upstream
Tssr140505	transcription start site region 140505	1827 bp upstream
Tssr140506	transcription start site region 140506	1407 bp upstream
Tssr140507	transcription start site region 140507	1044 bp upstream
Tssr140508	transcription start site region 140508	1002 bp upstream
Tssr140509	transcription start site region 140509	984 bp upstream
Tssr140510	transcription start site region 140510	936 bp upstream
Tssr140511	transcription start site region 140511	922 bp upstream
Tssr140512	transcription start site region 140512	289 bp downstream
Tssr140513	transcription start site region 140513	300 bp downstream
Tssr140514	transcription start site region 140514	333 bp downstream
Tssr140515	transcription start site region 140515	1908 bp downstream
Tssr140516	transcription start site region 140516	1927 bp downstream